IL_8G2B_341

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2B_341 not in the Motif Atlas

Geometric match to IL_1M5K_004

Geometric discrepancy: 0.382

The information below is about IL_1M5K_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8G2B|1|2a|C|1262
8G2B|1|2a|C|1263
8G2B|1|2a|C|1264
*
8G2B|1|2a|G|1271
8G2B|1|2a|G|1272
8G2B|1|2a|G|1273

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2s

30S ribosomal protein S19

Chain 2u

30S ribosomal protein Thx