IL_8G2D_260

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2D_260 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3628

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8G2D|1|2A|G|2110
8G2D|1|2A|C|2111
8G2D|1|2A|G|2112
8G2D|1|2A|U|2113
8G2D|1|2A|A|2114
8G2D|1|2A|G|2115
8G2D|1|2A|G|2116
8G2D|1|2A|A|2117
8G2D|1|2A|U|2118
8G2D|1|2A|A|2119
8G2D|1|2A|G|2120
*
8G2D|1|2A|C|2178
8G2D|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA