3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2D_315 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.0851
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8G2D|1|2a|U|580
8G2D|1|2a|G|581
8G2D|1|2a|U|582
8G2D|1|2a|A|583
8G2D|1|2a|G|584
*
8G2D|1|2a|U|757
8G2D|1|2a|G|758
8G2D|1|2a|A|759
8G2D|1|2a|G|760
8G2D|1|2a|G|761

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2l
30S ribosomal protein S12
Chain 2o
30S ribosomal protein S15
Chain 2q
30S ribosomal protein S17

Coloring options:


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