3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
8G2D|1|2a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2D_323 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.119
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

8G2D|1|2a|G|683
8G2D|1|2a|A|684
8G2D|1|2a|G|685
8G2D|1|2a|U|686
8G2D|1|2a|A|687
8G2D|1|2a|G|688
*
8G2D|1|2a|C|699
8G2D|1|2a|G|700
8G2D|1|2a|C|701
8G2D|1|2a|A|702
8G2D|1|2a|G|703
8G2D|1|2a|A|704
8G2D|1|2a|U|705
8G2D|1|2a|A|706
8G2D|1|2a|C|707

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2k
30S ribosomal protein S11

Coloring options:


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