IL_8G2D_346
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CCC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CCC,GGG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2D_346 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.3426
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8G2D|1|2a|C|1262
8G2D|1|2a|C|1263
8G2D|1|2a|C|1264
*
8G2D|1|2a|G|1271
8G2D|1|2a|G|1272
8G2D|1|2a|G|1273
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2s
- 30S ribosomal protein S19
- Chain 2u
- 30S ribosomal protein Thx
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