IL_8G2U_014

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

8G2U|1|B|U|276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_014 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.5512

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8G2U|1|B|C|274
8G2U|1|B|C|275
8G2U|1|B|U|276
8G2U|1|B|G|277
8G2U|1|B|A|278
8G2U|1|B|A|279
8G2U|1|B|U|280
8G2U|1|B|C|281
*
8G2U|1|B|G|359
8G2U|1|B|U|360
8G2U|1|B|G|361
8G2U|1|B|A|362
8G2U|1|B|G|363

Current chains

Chain B

23S rRNA

Nearby chains