IL_8G2U_028

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8G2U|1|B|U|931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_028 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3754

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8G2U|1|B|A|844
8G2U|1|B|A|845
8G2U|1|B|U|846
8G2U|1|B|U|847
8G2U|1|B|C|848
*
8G2U|1|B|G|930
8G2U|1|B|U|931
8G2U|1|B|U|932
8G2U|1|B|A|933
8G2U|1|B|U|934

Current chains

Chain B

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30