IL_8G2U_034

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_034 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5855

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8G2U|1|B|G|875
8G2U|1|B|C|876
8G2U|1|B|A|877
8G2U|1|B|A|878
8G2U|1|B|G|879
*
8G2U|1|B|C|898
8G2U|1|B|A|899
8G2U|1|B|A|900
8G2U|1|B|C|901
8G2U|1|B|C|902

Current chains

Chain B

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16