IL_8G2U_065

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8G2U|1|B|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_065 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0703

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8G2U|1|B|C|1686
8G2U|1|B|G|1687
8G2U|1|B|U|1688
8G2U|1|B|A|1689
8G2U|1|B|A|1690
8G2U|1|B|C|1691
*
8G2U|1|B|G|1696
8G2U|1|B|G|1697
8G2U|1|B|A|1698
8G2U|1|B|G|1699
8G2U|1|B|A|1700
8G2U|1|B|A|1701
8G2U|1|B|G|1702

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA