IL_8G2U_083

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAU,AUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_083 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1772

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8G2U|1|B|C|2096
8G2U|1|B|A|2097
8G2U|1|B|U|2098
*
8G2U|1|B|A|2191
8G2U|1|B|U|2192
8G2U|1|B|G|2193

Current chains

Chain B

23S rRNA

Nearby chains