IL_8G2U_108

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_108 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.1346

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

8G2U|1|B|C|2806
8G2U|1|B|U|2807
8G2U|1|B|G|2808
8G2U|1|B|A|2809
8G2U|1|B|A|2810
8G2U|1|B|G|2811
*
8G2U|1|B|C|2889
8G2U|1|B|G|2890
8G2U|1|B|U|2891
8G2U|1|B|G|2892

Current chains

Chain B

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L22