IL_8G2U_133

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_133 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.3085

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G2U|1|v|U|409
8G2U|1|v|G|410
8G2U|1|v|A|411
8G2U|1|v|A|412
8G2U|1|v|G|413
8G2U|1|v|A|414
8G2U|1|v|A|415
8G2U|1|v|G|416
*
8G2U|1|v|U|427
8G2U|1|v|G|428
8G2U|1|v|U|429
8G2U|1|v|A|430
8G2U|1|v|A|431
8G2U|1|v|A|432
8G2U|1|v|G|433

Current chains

Chain v

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S4