IL_8G2U_172

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_172 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.2719

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8G2U|1|v|G|1310
8G2U|1|v|A|1311
8G2U|1|v|G|1312
*
8G2U|1|v|C|1325
8G2U|1|v|U|1326
8G2U|1|v|C|1327

Current chains

Chain v

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S13

Chain r

30S ribosomal protein S19