IL_8G2U_177

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_177 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1222

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8G2U|1|v|G|1416
8G2U|1|v|G|1417
8G2U|1|v|A|1418
8G2U|1|v|G|1419
*
8G2U|1|v|U|1481
8G2U|1|v|G|1482
8G2U|1|v|A|1483
8G2U|1|v|C|1484

Current chains

Chain v

16S rRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA