IL_8G31_007

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_007 not in the Motif Atlas

Homologous match to IL_4WF9_001

Geometric discrepancy: 0.1403

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G31|1|B|G|24
8G31|1|B|U|25
8G31|1|B|G|26
8G31|1|B|G|27
8G31|1|B|A|28
8G31|1|B|U|29
8G31|1|B|G|30
*
8G31|1|B|C|510
8G31|1|B|U|511
8G31|1|B|G|512
8G31|1|B|A|513
8G31|1|B|A|514
8G31|1|B|A|515
8G31|1|B|C|516

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22