IL_8G31_012

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_012 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0811

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8G31|1|B|G|188
8G31|1|B|G|189
8G31|1|B|A|190
8G31|1|B|A|191
8G31|1|B|C|192
8G31|1|B|U|193
8G31|1|B|G|194
*
8G31|1|B|C|201
8G31|1|B|U|202
8G31|1|B|A|203
8G31|1|B|A|204
8G31|1|B|G|205
8G31|1|B|U|206
8G31|1|B|A|207
8G31|1|B|C|208

Current chains

Chain B

23S

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28