3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8G31|1|B|A|1127, 8G31|1|B|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_042 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0933
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8G31|1|B|G|1024
8G31|1|B|G|1025
8G31|1|B|G|1026
8G31|1|B|A|1027
8G31|1|B|A|1028
8G31|1|B|A|1029
8G31|1|B|C|1030
*
8G31|1|B|G|1124
8G31|1|B|G|1125
8G31|1|B|A|1126
8G31|1|B|A|1127
8G31|1|B|G|1128
8G31|1|B|A|1129
8G31|1|B|U|1130
8G31|1|B|G|1131
8G31|1|B|U|1132
8G31|1|B|A|1133
8G31|1|B|A|1134
8G31|1|B|C|1135
8G31|1|B|G|1136
8G31|1|B|G|1137
8G31|1|B|G|1138
8G31|1|B|G|1139
8G31|1|B|C|1140

Current chains

Chain B
23S

Nearby chains

Chain 4
50S ribosomal protein L36
Chain A
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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