3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
8G31|1|B|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_043 not in the Motif Atlas
Homologous match to IL_7RQB_041
Geometric discrepancy: 0.1039
The information below is about IL_7RQB_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_43275.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

8G31|1|B|G|1031
8G31|1|B|A|1032
8G31|1|B|U|1033
8G31|1|B|G|1034
*
8G31|1|B|C|1121
8G31|1|B|G|1122
8G31|1|B|C|1123

Current chains

Chain B
23S

Nearby chains

Chain 4
50S ribosomal protein L36
Chain M
50S ribosomal protein L16

Coloring options:


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