3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8G31|1|B|A|1801, 8G31|1|B|C|1816, 8G31|1|B|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_074 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.1039
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8G31|1|B|U|1798
8G31|1|B|G|1799
8G31|1|B|C|1800
8G31|1|B|A|1801
8G31|1|B|A|1802
8G31|1|B|A|1803
8G31|1|B|C|1804
*
8G31|1|B|G|1813
8G31|1|B|G|1814
8G31|1|B|A|1815
8G31|1|B|C|1816
8G31|1|B|G|1817
8G31|1|B|U|1818
8G31|1|B|A|1819
8G31|1|B|U|1820
8G31|1|B|A|1821

Current chains

Chain B
23S

Nearby chains

Chain C
50S ribosomal protein L2
Chain v
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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