IL_8G31_094

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_094 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2087

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8G31|1|B|C|2456
8G31|1|B|U|2457
8G31|1|B|G|2458
8G31|1|B|A|2459
*
8G31|1|B|U|2493
8G31|1|B|G|2494
8G31|1|B|G|2495

Current chains

Chain B

23S

Nearby chains

Chain 6

GTPase HflX

Chain M

50S ribosomal protein L16