IL_8G31_111

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

8G31|1|B|A|2872, 8G31|1|B|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_111 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1223

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8G31|1|B|G|2843
8G31|1|B|G|2844
8G31|1|B|U|2845
8G31|1|B|G|2846
*
8G31|1|B|C|2870
8G31|1|B|U|2871
8G31|1|B|A|2872
8G31|1|B|A|2873
8G31|1|B|C|2874

Current chains

Chain B

23S

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19