IL_8G31_140

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8G31|1|v|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_140 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1139

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8G31|1|v|C|569
8G31|1|v|G|570
8G31|1|v|U|571
8G31|1|v|A|572
8G31|1|v|A|573
8G31|1|v|A|574
8G31|1|v|G|575
*
8G31|1|v|C|880
8G31|1|v|G|881

Current chains

Chain v

16S

Nearby chains

Chain k

30S ribosomal protein S12

Chain p

30S ribosomal protein S17