3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUU*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_152 not in the Motif Atlas
Geometric match to IL_6IA2_001
Geometric discrepancy: 0.0841
The information below is about IL_6IA2_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8G31|1|v|G|833
8G31|1|v|U|834
8G31|1|v|U|835
*
8G31|1|v|G|851
8G31|1|v|G|852
8G31|1|v|C|853

Current chains

Chain v
16S

Nearby chains

Chain q
30S ribosomal protein S18
Chain t
30S ribosomal protein S21 (Fragment)

Coloring options:


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