IL_8G34_023

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8G34|1|B|G|801, 8G34|1|B|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_023 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0903

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G34|1|B|G|674
8G34|1|B|A|675
8G34|1|B|A|676
8G34|1|B|A|677
8G34|1|B|C|678
*
8G34|1|B|G|799
8G34|1|B|A|800
8G34|1|B|G|801
8G34|1|B|A|802
8G34|1|B|U|803
8G34|1|B|A|804
8G34|1|B|G|805
8G34|1|B|C|806

Current chains

Chain B

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15