IL_8G34_028

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8G34|1|B|G|776, 8G34|1|B|A|788, 8G34|1|B|A|789

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_028 not in the Motif Atlas

Homologous match to IL_4WF9_027

Geometric discrepancy: 0.1005

The information below is about IL_4WF9_027

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8G34|1|B|G|775
8G34|1|B|G|776
8G34|1|B|G|777
*
8G34|1|B|C|787
8G34|1|B|A|788
8G34|1|B|A|789
8G34|1|B|U|790
8G34|1|B|C|791

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22