IL_8G34_051

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8G34|1|B|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_051 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8G34|1|B|C|1208
8G34|1|B|U|1209
8G34|1|B|G|1210
8G34|1|B|C|1211
8G34|1|B|G|1212
8G34|1|B|A|1213
8G34|1|B|A|1214
8G34|1|B|G|1215
*
8G34|1|B|U|1234
8G34|1|B|G|1235
8G34|1|B|G|1236
8G34|1|B|A|1237
8G34|1|B|G|1238

Current chains

Chain B

23S

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22