IL_8G34_130

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8G34|1|v|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G34_130 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1217

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8G34|1|v|G|147
8G34|1|v|G|148
8G34|1|v|A|149
8G34|1|v|U|150
8G34|1|v|A|151
8G34|1|v|A|152
8G34|1|v|C|153
*
8G34|1|v|G|168
8G34|1|v|C|169
8G34|1|v|U|170
8G34|1|v|A|171
8G34|1|v|A|172
8G34|1|v|U|173
8G34|1|v|A|174
8G34|1|v|C|175

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20