IL_8G38_013

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_013 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0995

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8G38|1|B|C|239
8G38|1|B|C|240
8G38|1|B|A|241
8G38|1|B|G|242
8G38|1|B|U|243
8G38|1|B|A|244
8G38|1|B|G|245
*
8G38|1|B|C|253
8G38|1|B|G|254
8G38|1|B|A|255
8G38|1|B|A|256
8G38|1|B|C|257
8G38|1|B|G|258

Current chains

Chain B

23S

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15