IL_8G38_026

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_026 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1457

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8G38|1|B|U|703
8G38|1|B|G|704
8G38|1|B|A|705
8G38|1|B|A|706
8G38|1|B|G|707
*
8G38|1|B|U|724
8G38|1|B|G|725
8G38|1|B|G|726
8G38|1|B|A|727
8G38|1|B|G|728

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2