IL_8G38_039

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

8G38|1|B|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_039 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.0869

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8G38|1|B|C|998
8G38|1|B|U|999
8G38|1|B|A|1000
8G38|1|B|A|1001
8G38|1|B|G|1002
*
8G38|1|B|C|1153
8G38|1|B|G|1154
8G38|1|B|A|1155
8G38|1|B|A|1156
8G38|1|B|G|1157

Current chains

Chain B

23S

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L20

Chain Z

50S ribosomal protein L30