IL_8G38_051

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8G38|1|B|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_051 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.138

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8G38|1|B|C|1208
8G38|1|B|U|1209
8G38|1|B|G|1210
8G38|1|B|C|1211
8G38|1|B|G|1212
8G38|1|B|A|1213
8G38|1|B|A|1214
8G38|1|B|G|1215
*
8G38|1|B|U|1234
8G38|1|B|G|1235
8G38|1|B|G|1236
8G38|1|B|A|1237
8G38|1|B|G|1238

Current chains

Chain B

23S

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22