3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AA*UACU
Length
6 nucleotides
Bulged bases
8G38|1|B|A|2439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G38_085 not in the Motif Atlas
Homologous match to IL_7A0S_076
Geometric discrepancy: 0.1289
The information below is about IL_7A0S_076
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

8G38|1|B|A|2070
8G38|1|B|A|2071
*
8G38|1|B|U|2438
8G38|1|B|A|2439
8G38|1|B|C|2440
8G38|1|B|U|2441

Current chains

Chain B
23S

Nearby chains

Chain 6
GTPase HflX
Chain C
50S ribosomal protein L2

Coloring options:


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