IL_8G38_100

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8G38|1|B|G|2576, 8G38|1|B|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_100 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1009

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8G38|1|B|C|2510
8G38|1|B|U|2511
8G38|1|B|C|2512
*
8G38|1|B|G|2574
8G38|1|B|C|2575
8G38|1|B|G|2576
8G38|1|B|A|2577
8G38|1|B|G|2578

Current chains

Chain B

23S

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3