IL_8G38_127

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8G38|1|v|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1388

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8G38|1|v|G|147
8G38|1|v|G|148
8G38|1|v|A|149
8G38|1|v|U|150
8G38|1|v|A|151
8G38|1|v|A|152
8G38|1|v|C|153
*
8G38|1|v|G|168
8G38|1|v|C|169
8G38|1|v|U|170
8G38|1|v|A|171
8G38|1|v|A|172
8G38|1|v|U|173
8G38|1|v|A|174
8G38|1|v|C|175

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20