IL_8G38_129

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8G38|1|v|U|244, 8G38|1|v|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_129 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.136

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8G38|1|v|G|242
8G38|1|v|A|243
8G38|1|v|U|244
8G38|1|v|U|245
8G38|1|v|A|246
8G38|1|v|G|247
*
8G38|1|v|C|277
8G38|1|v|G|278
8G38|1|v|A|279
8G38|1|v|C|280
8G38|1|v|G|281
8G38|1|v|A|282
8G38|1|v|U|283
8G38|1|v|C|284

Current chains

Chain v

16S

Nearby chains

Chain k

30S ribosomal protein S12

Chain p

30S ribosomal protein S17