IL_8G38_138

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_138 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1394

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8G38|1|v|G|450
8G38|1|v|A|451
8G38|1|v|A|452
8G38|1|v|G|453
8G38|1|v|G|454
8G38|1|v|G|455
*
8G38|1|v|C|477
8G38|1|v|A|478
8G38|1|v|U|479
8G38|1|v|U|480
8G38|1|v|G|481
8G38|1|v|A|482
8G38|1|v|C|483

Current chains

Chain v

16S

Nearby chains

Chain o

30S ribosomal protein S16