IL_8G38_153

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_153 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0978

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8G38|1|v|G|887
8G38|1|v|G|888
8G38|1|v|A|889
8G38|1|v|G|890
8G38|1|v|U|891
8G38|1|v|A|892
8G38|1|v|C|893
8G38|1|v|G|894
*
8G38|1|v|U|905
8G38|1|v|A|906
8G38|1|v|A|907
8G38|1|v|A|908
8G38|1|v|A|909
8G38|1|v|C|910

Current chains

Chain v

16S

Nearby chains

Chain k

30S ribosomal protein S12