IL_8G38_180

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

8G38|1|B|G|1888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.3178

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8G38|1|B|U|1851
8G38|1|B|U|1852
8G38|1|B|A|1853
8G38|1|B|A|1854
8G38|1|B|U|1855
8G38|1|B|U|1856
8G38|1|B|G|1857
8G38|1|B|A|1858
8G38|1|B|U|1859
8G38|1|B|G|1860
*
8G38|1|B|U|1882
8G38|1|B|U|1883
8G38|1|B|G|1884
8G38|1|B|A|1885
8G38|1|B|U|1886
8G38|1|B|C|1887
8G38|1|B|G|1888
8G38|1|B|A|1889
8G38|1|B|A|1890
8G38|1|B|G|1891

Current chains

Chain B

23S

Nearby chains