IL_8G4S_007

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCCCG*CCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_007 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.2659

The information below is about IL_3LOA_001

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8G4S|1|2|C|104
8G4S|1|2|C|105
8G4S|1|2|C|106
8G4S|1|2|C|107
8G4S|1|2|G|108
*
8G4S|1|2|C|210
8G4S|1|2|C|211
8G4S|1|2|C|212
8G4S|1|2|G|213

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8