IL_8G4S_014

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAG*CGACUC

Length

9 nucleotides

Bulged bases

8G4S|1|2|U|292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_014 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.2104

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8G4S|1|2|G|275
8G4S|1|2|A|276
8G4S|1|2|G|277
*
8G4S|1|2|C|288
8G4S|1|2|G|289
8G4S|1|2|A|290
8G4S|1|2|C|291
8G4S|1|2|U|292
8G4S|1|2|C|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

Ribosomal protein S9

Chain X

SSU ribosomal protein S12P