IL_8G4S_019

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_019 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.1646

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8G4S|1|2|A|429
8G4S|1|2|G|430
8G4S|1|2|G|431
8G4S|1|2|G|432
8G4S|1|2|C|433
8G4S|1|2|A|434
8G4S|1|2|A|435
8G4S|1|2|G|436
*
8G4S|1|2|C|467
8G4S|1|2|U|468

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Ribosomal protein S2

Chain J

Ribosomal protein S9

Chain e

40S ribosomal protein S30