IL_8G4S_024

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GC*GGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_024 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.1618

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8G4S|1|2|G|525
8G4S|1|2|C|526
*
8G4S|1|2|G|576
8G4S|1|2|G|577
8G4S|1|2|A|578
8G4S|1|2|C|579

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

SSU ribosomal protein S17P

Chain W

SSU ribosomal protein S8P (Fragment)

Chain X

SSU ribosomal protein S12P