IL_8G4S_025

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GAG*CCGC

Length

7 nucleotides

Bulged bases

8G4S|1|2|C|570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_025 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.226

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8G4S|1|2|G|530
8G4S|1|2|A|531
8G4S|1|2|G|532
*
8G4S|1|2|C|569
8G4S|1|2|C|570
8G4S|1|2|G|571
8G4S|1|2|C|572

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain L

SSU ribosomal protein S17P