IL_8G4S_034

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGGAC*GGAUGAUC

Length

13 nucleotides

Bulged bases

8G4S|1|2|U|664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_034 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.119

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8G4S|1|2|G|646
8G4S|1|2|G|647
8G4S|1|2|G|648
8G4S|1|2|A|649
8G4S|1|2|C|650
*
8G4S|1|2|G|661
8G4S|1|2|G|662
8G4S|1|2|A|663
8G4S|1|2|U|664
8G4S|1|2|G|665
8G4S|1|2|A|666
8G4S|1|2|U|667
8G4S|1|2|C|668

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

Ribosomal protein S14