IL_8G4S_052

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

8G4S|1|2|C|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_052 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3138

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8G4S|1|2|G|1010
8G4S|1|2|U|1011
8G4S|1|2|G|1012
8G4S|1|2|C|1013
8G4S|1|2|A|1014
8G4S|1|2|U|1015
*
8G4S|1|2|A|1139
8G4S|1|2|U|1140
8G4S|1|2|G|1141
8G4S|1|2|C|1142

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Ribosomal protein S3

Chain K

Ribosomal protein S10B

Chain U

Ribosomal protein S20

Chain d

Ribosomal protein S29A

Chain i

Transfer RNA; tRNA

Chain k

mRNA