IL_8G4S_055

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_055 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.3658

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8G4S|1|2|C|1028
8G4S|1|2|C|1029
8G4S|1|2|C|1030
*
8G4S|1|2|G|1063
8G4S|1|2|A|1064
8G4S|1|2|G|1065

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

Ribosomal protein S2

Chain D

Ribosomal protein S3

Chain R

Ribosomal protein S17