IL_8G4S_061
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CCC*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_061 not in the Motif Atlas
- Geometric match to IL_5MWI_002
- Geometric discrepancy: 0.1297
- The information below is about IL_5MWI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8G4S|1|2|C|1276
8G4S|1|2|C|1277
8G4S|1|2|C|1278
*
8G4S|1|2|G|1288
8G4S|1|2|C|1289
8G4S|1|2|G|1290
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Q
- Ribosomal protein S16
- Chain T
- SSU ribosomal protein S19E (Fragment)
- Chain U
- Ribosomal protein S20
- Chain d
- Ribosomal protein S29A
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