IL_8G4S_063

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_063 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.0882

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8G4S|1|2|G|1323
8G4S|1|2|C|1324
8G4S|1|2|C|1325
8G4S|1|2|C|1326
*
8G4S|1|2|G|1412
8G4S|1|2|U|1413
8G4S|1|2|A|1414
8G4S|1|2|A|1415
8G4S|1|2|C|1416

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

Transfer RNA; tRNA

Chain k

mRNA