IL_8G4S_065

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

8G4S|1|2|A|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_065 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2498

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8G4S|1|2|C|1329
8G4S|1|2|G|1330
8G4S|1|2|C|1331
*
8G4S|1|2|G|1406
8G4S|1|2|A|1407
8G4S|1|2|A|1408
8G4S|1|2|G|1409

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

SSU ribosomal protein S12P

Chain i

Transfer RNA; tRNA

Chain k

mRNA