IL_8G5Y_138

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGUGUAGAAUAAG*UAC

Length

16 nucleotides

Bulged bases

8G5Y|1|L5|A|3965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_138 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.3977

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8G5Y|1|L5|G|3955
8G5Y|1|L5|G|3956
8G5Y|1|L5|U|3957
8G5Y|1|L5|G|3958
8G5Y|1|L5|U|3959
8G5Y|1|L5|A|3960
8G5Y|1|L5|G|3961
8G5Y|1|L5|A|3962
8G5Y|1|L5|A|3963
8G5Y|1|L5|U|3964
8G5Y|1|L5|A|3965
8G5Y|1|L5|A|3966
8G5Y|1|L5|G|3967
*
8G5Y|1|L5|U|4055
8G5Y|1|L5|A|4056
8G5Y|1|L5|C|4057

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a

Chain Sc

40S ribosomal protein S28